Generalized Perron Cluster Cluster Analysis program to coarse-grain reversible and non-reversible Markov State Models.

cellular-dynamics cellular-kinetics coarse-graining cyclic-states generalized-perron-cluster-cluster-analysis gpcca g-pcca markov-state-model markov-state-modeling metastable-states molecular-dynamics molecular-kinetics non-autonomous-process non-equilibrium-system non-reversible-process schur-decomposition schur-vectors spectral-clustering